It really depends on your preferences - I know but, let's admit it, more often than not, it all falls down to the question on whether or not you're keeping your car for a long time or otherwise.
From the 2, manual is still a lot more dependable. Automatic transmissions are so hard to maintain when your car gets old.
There are a lot of points to talk about but I'm just sharing to you something that has not yet been mentioned.